Welcome to the NMG R-server!

Messages 7 November 2011:

            install.packages(pkgs = c("nugohs1a520180hsentrezg.db", "nugohs1a520180hsentrezgcdf", "nugohs1a520180hsentrezgprobe"), repos = "http://nmg-r.bioinformatics.nl/bioc")
            install.packages(pkgs = c("nugomm1a520177mmentrezg.db", "nugomm1a520177mmentrezgcdf", "nugomm1a520177mmentrezgprobe"), repos = "http://nmg-r.bioinformatics.nl/bioc")

            install.packages(repos="http://nmg-r.bioinformatics.nl/2.x/bioc/") or,
            install.packages(repos="http://nmg-r.bioinformatics.nl/2.x/bioc-previous/")

      or browse through the packages listed below.

Older libraries are available   here (<= R-2.9.x), here (R-2.10.x), here (R-2.11.x),

                                                    here (R-2.12.x), and here (R-2.13.x).

Page contents:

On this page, you can find R/Bioconductor libraries for Unix/Linux and Windows:
1. Bioconductor support libraries for the human and mouse NuGO arrays.
2. Bioconductor annotation libraries for the Affymetrix Gene Titan system that are not provided by the Bioconductor project.
3. Bioconductor CDF libraries for the Affymetrix gene ST arrays and Gene Titan System that are not (or not proper) provided by the Bioconductor project.
4. Bioconductor libraries for the MBNI Custom Chip Definition Files (CDFs) for the human and mouse NuGO arrays (cdf, probe, and Entrez gene annotation).
5. For the current MBNI Custom Chip Definition Files (CDFs) release: Bioconductor libraries for human, mouse, and rat species that we support (Entrez gene; also probe and cdf)*.
6. For the previous MBNI Custom Chip Definition Files (CDFs) release: Bioconductor libraries for human, mouse, and rat species that we support (Entrez gene; also probe and cdf)*.

*: For convenience, we mirror the probe and CDF files as provided by MBNI. The version 14.1.0. annotation libraries, as hosted by MBNI, are complient with Bioconductor. These packages are mirrorred here (and not created by ourselves). In case MBNI provides no annotation libraries, these are created by ourselves. We provide only the Entrezg libraries, and tairg for Arabidopsis.


REMARK: we decided to use the ENTREZ Custom CDF-files for the following reasons:
Off course, you are free to use one of the other formats, e.g. ENSEMBL, but we do not provide Bioconductor annotation libraries for those custom CDFs.

Fast installation

NuGO arrays (Affymetrix):
    source("http://www.bioconductor.org/biocLite.R")
    biocLite(c("nugohs1a520180.db", "nugohs1a520180cdf", "nugohs1a520180probe"))
    biocLite(c("nugomm1a520177.db", "nugomm1a520177cdf", "nugomm1a520177probe"))

hs: human microarrays; mm: mouse microarrays, and YES: these libraries are officially supported via Bioconductor!

Custom CDFs:
Please do this if you receive an error message on missing libraries (only the lacking libraries need to be installed):
    source("http://www.bioconductor.org/biocLite.R")
    biocLite(c("org.At.tair.db", "org.Hs.eg.db", "org.Mm.eg.db", "org.Rn.eg.db"))

NuGO arrays (Custom CDF - current):
    install.packages(pkgs = c("nugohs1a520180hsentrezg.db", "nugohs1a520180hsentrezgcdf", "nugohs1a520180hsentrezgprobe"), repos = "http://nmg-r.bioinformatics.nl/bioc")
    install.packages(pkgs = c("nugomm1a520177mmentrezg.db", "nugomm1a520177mmentrezgcdf", "nugomm1a520177mmentrezgprobe"), repos = "http://nmg-r.bioinformatics.nl/bioc")

NuGO arrays (Custom CDF - previous):
    install.packages(pkgs = c("nugohs1a520180hsentrezg.db", "nugohs1a520180hsentrezgcdf", "nugohs1a520180hsentrezgprobe"), repos = "http://nmg-r.bioinformatics.nl/bioc-previous")
    install.packages(pkgs = c("nugomm1a520177mmentrezg.db", "nugomm1a520177mmentrezgcdf", "nugomm1a520177mmentrezgprobe"), repos ="http://nmg-r.bioinformatics.nl/bioc-previous")

Current Custom CDf is version 14.1.0 (March 11 2011). Previous Custom CDF is version 13.0.0 (July 6 2010).
If new Custom CDF libraries are released, the versions will shift up (and the current "previous" repository will be dropped).
Please check the tables below to see whether your chip is supported! Simply use the proper library names in the commands as shown in the examples above.

Manual Installation

Installation instructions

For Windows: download the appropriate .zip-files from the tables below. In RGui, go to Packages => Install package(s) from local zip-files... Browse to the location where you downloaded your .zip-files and select the files you want to install. Done!

For Unix/Linux: download the appropriate .tar.gz files from the tables below. cd to the directory where you downloaded your .tar.gz files and execute the following command (multiple times for multiple .tar.gz files): R CMD INSTALL <your downloaded .tar.gz file>.

Download tables

1. Human and mouse NuGO array support files as provided on the Bioconductor web site (7 November 2011).
    Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each chip!
Affymetrix array type Linux/Unix
Windows
Human NuGO Array (nugohs1a520180) nugohs1a520180.db_2.4.0.tar.gz
nugohs1a520180cdf_2.4.1.tar.gz
nugohs1a520180probe_2.4.0.tar.gz
nugohs1a520180.db_2.4.0.zip
nugohs1a520180cdf_2.4.1.zip
nugohs1a520180probe_2.4.0.zip
Mouse NuGO Array (nugomm1a520177) nugomm1a520177.db_2.4.0.tar.gz
nugomm1a520177cdf_2.4.1.tar.gz
nugomm1a520177probe_2.4.0.tar.gz
nugomm1a520177.db_2.4.0.zip
nugomm1a520177cdf_2.4.1.zip
nugomm1a520177probe_2.4.0.zip

2. Human and mouse NuGO array support files (VERSION 14.1.0 (cdf, probe) & version 14.1.1 (.db); MBNI Custom CDF; updated 7 November 2011).
To obtain full microarray support, you need to download and install all three libraries for each chip!
Affymetrix array type Linux/Unix Windows
Human NuGO array (nugohs1a520180) nugohs1a520180hsentrezg.db_14.1.1.tar.gz
nugohs1a520180hsentrezgcdf_14.1.0.tar.gz
nugohs1a520180hsentrezgprobe_14.1.0.tar.gz
nugohs1a520180hsentrezg.db_14.1.1.zip
nugohs1a520180hsentrezgcdf_14.1.0.zip
nugohs1a520180hsentrezgprobe_14.1.0.zip
Mouse NuGO array (nugomm1a520177) nugomm1a520177mmentrezg.db_14.1.1.tar.gz
nugomm1a520177mmentrezgcdf_14.1.0.tar.gz
nugomm1a520177mmentrezgprobe_14.1.0.tar.gz
nugomm1a520177mmentrezg.db_14.1.1.zip
nugomm1a520177mmentrezgcdf_14.1.0.zip
nugomm1a520177mmentrezgprobe_14.1.0.zip

3. Annotation libraries for the Affymetrix GeneTitan plates (based on the AFFYMATRIX probe annotations). Updated 7 November 2011).
    The CDF and PROBE libraries are available on http://www.bioconductor.org or via the biocLite() command.
    To obtain full microarray support, you need to download and install all three libraries (cdf. probe, and .db) for each chip!
Affymetrix array type Linux/Unix Windows
Affymetrix GeneTitan plate hthgu133pluspm hthgu133pluspm.db_14.1.1.tar.gz hthgu133pluspm.db_14.1.1.zip
Affymetrix GeneTitan plate htmg430a
htmg430a.db_14.1.1.tar.gz htmg430a.db_14.1.1.zip
Affymetrix GeneTitan plate htmg430b htmg430b.db_14.1.1.tar.gz htmg430b.db_14.1.1.zip
Affymetrix GeneTitan plate htmg430pm
htmg430pm.db_14.1.1.tar.gz htmg430pm.db_14.1.1.zip
Affymetrix GeneTitan plate htrat230pm
htrat230pm.db_14.1.1.tar.gz htrat230pm.db_14.1.1.zip
Affymetrix GeneTitan plate htratfocus
htratfocus.db_14.1.1.tar.gz htratfocus.db_14.1.1.zip

4. Affymetrix derived CDF libraries for the gene ST arrays and the GeneTitan plates (Updated 7 November 2011).
    These CDF-files are created utilizing oligo and the PdInfo2Cdf.R script.
    More information on the procedure is available here and here.
Affymetrix array type Linux/Unix Windows
hugene10stv1cdf hugene10stv1cdf_2.4.0.tar.gz hugene10stv1cdf_2.4.0.zip
hugene11stv1cdf hugene11stv1cdf_2.4.0.tar.gz hugene11stv1cdf_2.4.0.zip
mogene10stv1cdf mogene10stv1cdf_2.4.0.tar.gz mogene10stv1cdf_2.4.0.zip
mogene11stv1cdf mogene11stv1cdf_2.4.0.tar.gz mogene11stv1cdf_2.4.0.zip
ragene10stv1cdf
ragene10stv1cdf_2.4.0.tar.gz ragene10stv1cdf_2.4.0.zip
ragene11stv1cdf
ragene11stv1cdf_2.4.0.tar.gz ragene11stv1cdf_2.4.0.zip

5. Annotation libraries for the MBNI Custom CDF annotation files (mirrored from MBNI; VERSION 14.1.0 (cdf, probe) & version 14.1.1 (.db); updated 7 November 2011).
    Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each chip!
Affymetrix array type
Linux/Unix
Windows
Arabidopsis thaliana (ath1121501attairg)
ath1121501attairg.db_14.1.1.tar.gz
ath1121501attairgcdf_14.1.0.tar.gz
ath1121501attairgprobe_14.1.0.tar.gz
ath1121501attairg.db_14.1.1.zip
ath1121501attairgcdf_14.1.0.zip
ath1121501attairgprobe_14.1.0.zip
Arabidopsis thaliana (tilingatsnptilx520433attairg)
NOTE: version 14 is not available, using version 13 instead!
tilingatsnptilx520433attairg.db_13.0.3.tar.gz
tilingatsnptilx520433attairgcdf_13.0.0.tar.gz
tilingatsnptilx520433attairgprobe_13.0.0.tar.gz
tilingatsnptilx520433attairg.db_13.0.3.zip
tilingatsnptilx520433attairgcdf_13.0.0.zip
tilingatsnptilx520433attairgprobe_13.0.0.zip

Bos taurus (bovinebtentrezg)

bovinebtentrezg.db_14.1.1.tar.gz
bovinebtentrezgcdf_14.1.0.tar.gz
bovinebtentrezgprobe_14.1.0.tar.gz
bovinebtentrezg.db_14.1.1.zip
bovinebtentrezgcdf_14.1.0.zip
bovinebtentrezgprobe_14.1.0.zip
Homo sapiens hgfocus
hgfocushsentrezg.db_14.1.1.tar.gz
hgfocushsentrezgcdf_14.1.0.tar.gz
hgfocushsentrezgprobe_14.1.0.tar.gz
hgfocushsentrezg.db_14.1.1.zip
hgfocushsentrezgcdf_14.1.0.zip
hgfocushsentrezgprobe_14.1.0.zip
Homo sapiens hgu133a2
hgu133a2hsentrezg.db_14.1.1.tar.gz
hgu133a2hsentrezgcdf_14.1.0.tar.gz
hgu133a2hsentrezgprobe_14.1.0.tar.gz
hgu133a2hsentrezg.db_14.1.1.zip
hgu133a2hsentrezgcdf_14.1.0.zip
hgu133a2hsentrezgprobe_14.1.0.zip
Homo sapiens hgu133a
hgu133ahsentrezg.db_14.1.1.tar.gz
hgu133ahsentrezgcdf_14.1.0.tar.gz
hgu133ahsentrezgprobe_14.1.0.tar.gz
hgu133ahsentrezg.db_14.1.1.zip
hgu133ahsentrezgcdf_14.1.0.zip
hgu133ahsentrezgprobe_14.1.0.zip
Homo sapiens hthgu133a (GeneTitan plates)
hthgu133ahsentrezg.db_14.1.1.tar.gz
hthgu133ahsentrezgcdf_14.1.0.tar.gz
hthgu133ahsentrezgprobe_14.1.0.tar.gz
hthgu133ahsentrezg.db_14.1.1.zip
hthgu133ahsentrezgcdf_14.1.0.zip
hthgu133ahsentrezgprobe_14.1.0.zip
Homo Sapiens hgu133b
hgu133bhsentrezg.db_14.1.1.tar.gz
hgu133bhsentrezgcdf_14.1.0.tar.gz
hgu133bhsentrezgprobe_14.1.0.tar.gz
hgu133bhsentrezg.db_14.1.1.zip
hgu133bhsentrezgcdf_14.1.0.zip
hgu133bhsentrezgprobe_14.1.0.zip
Homo sapiens hthgu133b (GeneTitan plates) hthgu133bhsentrezg.db_14.1.1.tar.gz
hthgu133bhsentrezgcdf_14.1.0.tar.gz
hthgu133bhsentrezgprobe_14.1.0.tar.gz
hthgu133bhsentrezg.db_14.1.1.zip
hthgu133bhsentrezgcdf_14.1.0.zip
hthgu133bhsentrezgprobe_14.1.0.zip
Homo Sapiens hgu133plus2
hgu133plus2hsentrezg.db_14.1.1.tar.gz
hgu133plus2hsentrezgcdf_14.1.0.tar.gz
hgu133plus2hsentrezgprobe_14.1.0.tar.gz
hgu133plus2hsentrezg.db_14.1.1.zip
hgu133plus2hsentrezgcdf_14.1.0.zip
hgu133plus2hsentrezgprobe_14.1.0.zip
Homo sapiens hthgu133pluspm (GeneTitan plates) hthgu133pluspmhsentrezg.db_14.1.1.tar.gz
hthgu133pluspmhsentrezgcdf_14.1.0.tar.gz
hthgu133pluspmhsentrezgprobe_14.1.0.tar.gz
hthgu133pluspmhsentrezg.db_14.1.1.zip
hthgu133pluspmhsentrezgcdf_14.1.0.zip
hthgu133pluspmhsentrezgprobe_14.1.0.zip
Homo Sapiens hgu95av2
hgu95av2hsentrezg.db_14.1.1.tar.gz
hgu95av2hsentrezgcdf_14.1.0.tar.gz
hgu95av2hsentrezgprobe_14.1.0.tar.gz
hgu95av2hsentrezg.db_14.1.1.zip
hgu95av2hsentrezgcdf_14.1.0.zip
hgu95av2hsentrezgprobe_14.1.0.zip

Homo Sapiens hgu95a

hgu95ahsentrezg.db_14.1.1.tar.gz
hgu95ahsentrezgcdf_14.1.0.tar.gz
hgu95ahsentrezgprobe_14.1.0.tar.gz
hgu95ahsentrezg.db_14.1.1.zip
hgu95ahsentrezgcdf_14.1.0.zip
hgu95ahsentrezgprobe_14.1.0.zip
Homo Sapiens hgu95b
hgu95bhsentrezg.db_14.1.1.tar.gz
hgu95bhsentrezgcdf_14.1.0.tar.gz
hgu95bhsentrezgprobe_14.1.0.tar.gz
hgu95bhsentrezg.db_14.1.1.zip
hgu95bhsentrezgcdf_14.1.0.zip
hgu95bhsentrezgprobe_14.1.0.zip
Homo Sapiens hgu95c
hgu95chsentrezg.db_14.1.1.tar.gz
hgu95chsentrezgcdf_14.1.0.tar.gz
hgu95chsentrezgprobe_14.1.0.tar.gz
hgu95chsentrezg.db_14.1.1.zip
hgu95chsentrezgcdf_14.1.0.zip
hgu95chsentrezgprobe_14.1.0.zip
Homo Sapiens hgu95d
hgu95dhsentrezg.db_14.1.1.tar.gz
hgu95dhsentrezgcdf_14.1.0.tar.gz
hgu95dhsentrezgprobe_14.1.0.tar.gz
hgu95dhsentrezg.db_14.1.1.zip
hgu95dhsentrezgcdf_14.1.0.zip
hgu95dhsentrezgprobe_14.1.0.zip
Homo Sapiens hgu95e
hgu95ehsentrezg.db_14.1.1.tar.gz
hgu95ehsentrezgcdf_14.1.0.tar.gz
hgu95ehsentrezgprobe_14.1.0.tar.gz
hgu95ehsentrezg.db_14.1.1.zip
hgu95ehsentrezgcdf_14.1.0.zip
hgu95ehsentrezgprobe_14.1.0.zip

Homo sapiens hcg110

hcg110hsentrezg.db_14.1.1.tar.gz
hcg110hsentrezgcdf_14.1.0.tar.gz
hcg110hsentrezgprobe_14.1.0.tar.gz
hcg110hsentrezg.db_14.1.1.zip
hcg110hsentrezgcdf_14.1.0.zip
hcg110hsentrezgprobe_14.1.0.zip

Homo sapiens hgu219

hgu219hsentrezg.db_14.1.1.tar.gz
hgu219hsentrezgcdf_14.1.0.tar.gz
hgu219hsentrezgprobe_14.1.0.tar.gz
hgu219hsentrezg.db_14.1.1.zip
hgu219hsentrezgcdf_14.1.0.zip
hgu219hsentrezgprobe_14.1.0.zip

Homo sapiens hu6800

hu6800hsentrezg.db_14.1.1.tar.gz
hu6800hsentrezgcdf_14.1.0.tar.gz
hu6800hsentrezgprobe_14.1.0.tar.gz
hu6800hsentrezg.db_14.1.1.zip
hu6800hsentrezgcdf_14.1.0.zip
hu6800hsentrezgprobe_14.1.0.zip
Homo sapiens 133x3p
u133x3phsentrezg.db_14.1.1.tar.gz
u133x3phsentrezgcdf_14.1.0.tar.gz
u133x3phsentrezgprobe_14.1.0.tar.gz
u133x3phsentrezg.db_14.1.1.zip
u133x3phsentrezgcdf_14.1.0.zip
u133x3phsentrezgprobe_14.1.0.zip
Homo sapiens hugene10stv1
hugene10stv1hsentrezg.db_14.1.1.tar.gz
hugene10stv1hsentrezgcdf_14.1.0.tar.gz
hugene10stv1hsentrezgprobe_14.1.0.tar.gz
hugene10stv1hsentrezg.db_14.1.1.zip
hugene10stv1hsentrezgcdf_14.1.0.zip
hugene10stv1hsentrezgprobe_14.1.0.zip

Homo sapiens hugene11stv1

hugene11stv1hsentrezg.db_14.1.1.tar.gz
hugene11stv1hsentrezgcdf_14.1.0.tar.gz
hugene11stv1hsentrezgprobe_14.1.0.tar.gz
hugene11stv1hsentrezg.db_14.1.1.zip
hugene11stv1hsentrezgcdf_14.1.0.zip
hugene11stv1hsentrezgprobe_14.1.0.zip
Mus musculus mgu74av2
mgu74av2mmentrezg.db_14.1.1.tar.gz
mgu74av2mmentrezgcdf_14.1.0.tar.gz
mgu74av2mmentrezgprobe_14.1.0.tar.gz
mgu74av2mmentrezg.db_14.1.1.zip
mgu74av2mmentrezgcdf_14.1.0.zip
mgu74av2mmentrezgprobe_14.1.0.zip
Mus musculus mgu74bv2
mgu74bv2mmentrezg.db_14.1.1.tar.gz
mgu74bv2mmentrezgcdf_14.1.0.tar.gz
mgu74bv2mmentrezgprobe_14.1.0.tar.gz
mgu74bv2mmentrezg.db_14.1.1.zip
mgu74bv2mmentrezgcdf_14.1.0.zip
mgu74bv2mmentrezgprobe_14.1.0.zip
Mus musculus mgu74cv2
mgu74cv2mmentrezg.db_14.1.1.tar.gz
mgu74cv2mmentrezgcdf_14.1.0.tar.gz
mgu74cv2mmentrezgprobe_14.1.0.tar.gz
mgu74cv2mmentrezg.db_14.1.1.zip
mgu74cv2mmentrezgcdf_14.1.0.zip
mgu74cv2mmentrezgprobe_14.1.0.zip
Mus musculus moe430a
moe430ammentrezg.db_14.1.1.tar.gz
moe430ammentrezgcdf_14.1.0.tar.gz
moe430ammentrezgprobe_14.1.0.tar.gz
moe430ammentrezg.db_14.1.1.zip
moe430ammentrezgcdf_14.1.0.zip
moe430ammentrezgprobe_14.1.0.zip
Mus musculus htmg430a (GeneTitan plates)
htmg430ammentrezg.db_14.1.1.tar.gz
htmg430ammentrezgcdf_14.1.0.tar.gz
htmg430ammentrezgprobe_14.1.0.tar.gz
htmg430ammentrezg.db_14.1.1.zip
htmg430ammentrezgcdf_14.1.0.zip
htmg430ammentrezgprobe_14.1.0.zip
Mus musculus moe430b
moe430bmmentrezg.db_14.1.1.tar.gz
moe430bmmentrezgcdf_14.1.0.tar.gz
moe430bmmentrezgprobe_14.1.0.tar.gz
moe430bmmentrezg.db_14.1.1.zip
moe430bmmentrezgcdf_14.1.0.zip
moe430bmmentrezgprobe_14.1.0.zip
Mus musculus htmg430b (GeneTitan plates) htmg430bmmentrezg.db_14.1.1.tar.gz
htmg430bmmentrezgcdf_14.1.0.tar.gz
htmg430bmmentrezgprobe_14.1.0.tar.gz
htmg430bmmentrezg.db_14.1.1.zip
htmg430bmmentrezgcdf_14.1.0.zip
htmg430bmmentrezgprobe_14.1.0.zip
Mus musculus moe430a2
mouse430a2mmentrezg.db_14.1.1.tar.gz
mouse430a2mmentrezgcdf_14.1.0.tar.gz
mouse430a2mmentrezgprobe_14.1.0.tar.gz
mouse430a2mmentrezg.db_14.1.1.zip
mouse430a2mmentrezgcdf_14.1.0.zip
mouse430a2mmentrezgprobe_14.1.0.zip
Mus musculus mouse4302
mouse4302mmentrezg.db_14.1.1.tar.gz
mouse4302mmentrezgcdf_14.1.0.tar.gz
mouse4302mmentrezgprobe_14.1.0.tar.gz
mouse4302mmentrezg.db_14.1.1.zip
mouse4302mmentrezgcdf_14.1.0.zip
mouse4302mmentrezgprobe_14.1.0.zip
Mus musculus htmg430pm (GeneTitan plates)
htmg430pmmmentrezg.db_14.1.1.tar.gz
htmg430pmmmentrezgcdf_14.1.0.tar.gz
htmg430pmmmentrezgprobe_14.1.0.tar.gz
htmg430pmmmentrezg.db_14.1.1.zip
htmg430pmmmentrezgcdf_14.1.0.zip
htmg430pmmmentrezgprobe_14.1.0.zip
Mus musculus mogene10stv1
mogene10stv1mmentrezg.db_14.1.1.tar.gz
mogene10stv1mmentrezgcdf_14.1.0.tar.gz
mogene10stv1mmentrezgprobe_14.1.0.tar.gz
mogene10stv1mmentrezg.db_14.1.1.zip
mogene10stv1mmentrezgcdf_14.1.0.zip
mogene10stv1mmentrezgprobe_14.1.0.zip

Mus musculus mogene11stv1

mogene11stv1mmentrezg.db_14.1.1.tar.gz
mogene11stv1mmentrezgcdf_14.1.0.tar.gz
mogene11stv1mmentrezgprobe_14.1.0.tar.gz
mogene11stv1mmentrezg.db_14.1.1.zip
mogene11stv1mmentrezgcdf_14.1.0.zip
mogene11stv1mmentrezgprobe_14.1.0.zip

Sus scrofa porcine

porcinessentrezg.db_14.1.1.tar.gz
porcinessentrezgcdf_14.1.0.tar.gz
porcinessentrezgprobe_14.1.0.tar.gz
porcinessentrezg.db_14.1.1.zip
porcinessentrezgcdf_14.1.0.zip
porcinessentrezgprobe_14.1.0.zip
Rattus norvegicus rae230a
rae230arnentrezg.db_14.1.1.tar.gz
rae230arnentrezgcdf_14.1.0.tar.gz
rae230arnentrezgprobe_14.1.0.tar.gz
rae230arnentrezg.db_14.1.1.zip
rae230arnentrezgcdf_14.1.0.zip
rae230arnentrezgprobe_14.1.0.zip
Rattus norvegicus rae230b
rae230brnentrezg.db_14.1.1.tar.gz
rae230brnentrezgcdf_14.1.0.tar.gz
rae230brnentrezgprobe_14.1.0.tar.gz
rae230brnentrezg.db_14.1.1.zip
rae230brnentrezgcdf_14.1.0.zip
rae230brnentrezgprobe_14.1.0.zip
Rattus norvegicus rat2302
rat2302rnentrezg.db_14.1.1.tar.gz
rat2302rnentrezgcdf_14.1.0.tar.gz
rat2302rnentrezgprobe_14.1.0.tar.gz
rat2302rnentrezg.db_14.1.1.zip
rat2302rnentrezgcdf_14.1.0.zip
rat2302rnentrezgprobe_14.1.0.zip
Rattus norvegicus htrat230pm (GeneTitan plates)
htrat230pmrnentrezg.db_14.1.1.tar.gz
htrat230pmrnentrezgcdf_14.1.0.tar.gz
htrat230pmrnentrezgprobe_14.1.0.tar.gz
htrat230pmrnentrezg.db_14.1.1.zip
htrat230pmrnentrezgcdf_14.1.0.zip
htrat230pmrnentrezgprobe_14.1.0.zip
Rattus norvegicus rgu34a
rgu34arnentrezg.db_14.1.1.tar.gz
rgu34arnentrezgcdf_14.1.0.tar.gz
rgu34arnentrezgprobe_14.1.0.tar.gz
rgu34arnentrezg.db_14.1.1.zip
rgu34arnentrezgcdf_14.1.0.zip
rgu34arnentrezgprobe_14.1.0.zip
Rattus norvegicus rgu34b
rgu34brnentrezg.db_14.1.1.tar.gz
rgu34brnentrezgcdf_14.1.0.tar.gz
rgu34brnentrezgprobe_14.1.0.tar.gz
rgu34brnentrezg.db_14.1.1.zip
rgu34brnentrezgcdf_14.1.0.zip
rgu34brnentrezgprobe_14.1.0.zip
Rattus norvegicus rgu34c
rgu34crnentrezg.db_14.1.1.tar.gz
rgu34crnentrezgcdf_14.1.0.tar.gz
rgu34crnentrezgprobe_14.1.0.tar.gz
rgu34crnentrezg.db_14.1.1.zip
rgu34crnentrezgcdf_14.1.0.zip
rgu34crnentrezgprobe_14.1.0.zip
Rattus norvegicus ragene10stv1
ragene10stv1rnentrezg.db_14.1.1.tar.gz
ragene10stv1rnentrezgcdf_14.1.0.tar.gz
ragene10stv1rnentrezgprobe_14.1.0.tar.gz
ragene10stv1rnentrezg.db_14.1.1.zip
ragene10stv1rnentrezgcdf_14.1.0.zip
ragene10stv1rnentrezgprobe_14.1.0.zip

Rattus norvegicus ragene11stv1

ragene11stv1rnentrezg.db_14.1.1.tar.gz
ragene11stv1rnentrezgcdf_14.1.0.tar.gz
ragene11stv1rnentrezgprobe_14.1.0.tar.gz
ragene11stv1rnentrezg.db_14.1.1.zip
ragene11stv1rnentrezgcdf_14.1.0.zip
ragene11stv1rnentrezgprobe_14.1.0.zip
Rattus norvegicus htratfocus (GeneTitan plates)
htratfocusrnentrezg.db_14.1.1.tar.gz
htratfocusrnentrezgcdf_14.1.0.tar.gz
htratfocusrnentrezgprobe_14.1.0.tar.gz
htratfocusrnentrezg.db_14.1.1.zip
htratfocusrnentrezgcdf_14.1.0.zip
htratfocusrnentrezgprobe_14.1.0.zip

Rattus norvegicus rattoxfx

rattoxfxrnentrezg.db_14.1.1.tar.gz
rattoxfxrnentrezgcdf_14.1.0.tar.gz
rattoxfxrnentrezgprobe_14.1.0.tar.gz
rattoxfxrnentrezg.db_14.1.1.zip
rattoxfxrnentrezgcdf_14.1.0.zip
rattoxfxrnentrezgprobe_14.1.0.zip

Rattus norvegicus rnu34

rnu34rnentrezg.db_14.1.1.tar.gz
rnu34rnentrezgcdf_14.1.0.tar.gz
rnu34rnentrezgprobe_14.1.0.tar.gz
rnu34rnentrezg.db_14.1.1.zip
rnu34rnentrezgcdf_14.1.0.zip
rnu34rnentrezgprobe_14.1.0.zip

Rattus norvegicus rtu34

rtu34rnentrezg.db_14.1.1.tar.gz
rtu34rnentrezgcdf_14.1.0.tar.gz
rtu34rnentrezgprobe_14.1.0.tar.gz
rtu34rnentrezg.db_14.1.1.zip
rtu34rnentrezgcdf_14.1.0.zip
rtu34rnentrezgprobe_14.1.0.zip

6. Human and mouse NuGO array support files (VERSION 13.0.0 (cdf, probe) & version 13.0.3 (.db); MBNI Custom CDF; updated 7 November 2011).
    Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each chip!
Affymetrix array type Linux/Unix Windows
Human NuGO array (nugohs1a520180) nugohs1a520180hsentrezg.db_13.0.3.tar.gz
nugohs1a520180hsentrezgcdf_13.0.0.tar.gz
nugohs1a520180hsentrezgprobe_13.0.0.tar.gz
nugohs1a520180hsentrezg.db_13.0.3.zip
nugohs1a520180hsentrezgcdf_13.0.0.zip
nugohs1a520180hsentrezgprobe_13.0.0.zip
Mouse NuGO array (nugomm1a520177) nugomm1a520177mmentrezg.db_13.0.3.tar.gz
nugomm1a520177mmentrezgcdf_13.0.0.tar.gz
nugomm1a520177mmentrezgprobe_13.0.0.tar.gz
nugomm1a520177mmentrezg.db_13.0.3.zip
nugomm1a520177mmentrezgcdf_13.0.0.zip
nugomm1a520177mmentrezgprobe_13.0.0.zip

7. Annotation libraries for the MBNI Custom CDF annotation files (VERSION 13.0.0 (cdf.probe) & version 13.0.3 (.db); updated 7 November 2011).
    Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each chip!
Affymetrix array type
Linux/Unix
Windows
Arabidopsis thaliana (ath1121501attairg)
ath1121501attairg.db_13.0.3.tar.gz
ath1121501attairgcdf_13.0.0.tar.gz
ath1121501attairgprobe_13.0.0.tar.gz
ath1121501attairg.db_13.0.3.zip
ath1121501attairgcdf_13.0.0.zip
ath1121501attairgprobe_13.0.0.zip
Arabidopsis thaliana (tilingatsnptilx520433attairg) tilingatsnptilx520433attairg.db_13.0.3.tar.gz
tilingatsnptilx520433attairgcdf_13.0.0.tar.gz
tilingatsnptilx520433attairgprobe_13.0.0.tar.gz
tilingatsnptilx520433attairg.db_13.0.3.zip
tilingatsnptilx520433attairgcdf_13.0.0.zip
tilingatsnptilx520433attairgprobe_13.0.0.zip
Homo sapiens hgfocus
hgfocushsentrezg.db_13.0.3.tar.gz
hgfocushsentrezgcdf_13.0.0.tar.gz
hgfocushsentrezgprobe_13.0.0.tar.gz
hgfocushsentrezg.db_13.0.3.zip
hgfocushsentrezgcdf_13.0.0.zip
hgfocushsentrezgprobe_13.0.0.zip
Homo sapiens hgu133a2
hgu133a2hsentrezg.db_13.0.3.tar.gz
hgu133a2hsentrezgcdf_13.0.0.tar.gz
hgu133a2hsentrezgprobe_13.0.0.tar.gz
hgu133a2hsentrezg.db_13.0.3.zip
hgu133a2hsentrezgcdf_13.0.0.zip
hgu133a2hsentrezgprobe_13.0.0.zip
Homo sapiens hgu133a
hgu133ahsentrezg.db_13.0.3.tar.gz
hgu133ahsentrezgcdf_13.0.0.tar.gz
hgu133ahsentrezgprobe_13.0.0.tar.gz
hgu133ahsentrezg.db_13.0.3.zip
hgu133ahsentrezgcdf_13.0.0.zip
hgu133ahsentrezgprobe_13.0.0.zip
Homo sapiens hthgu133a (GeneTitan plates)
hthgu133ahsentrezg.db_13.0.3.tar.gz
hthgu133ahsentrezgcdf_13.0.0.tar.gz
hthgu133ahsentrezgprobe_13.0.0.tar.gz
hthgu133ahsentrezg.db_13.0.3.zip
hthgu133ahsentrezgcdf_13.0.0.zip
hthgu133ahsentrezgprobe_13.0.0.zip
Homo Sapiens hgu133b
hgu133bhsentrezg.db_13.0.3.tar.gz
hgu133bhsentrezgcdf_13.0.0.tar.gz
hgu133bhsentrezgprobe_13.0.0.tar.gz
hgu133bhsentrezg.db_13.0.3.zip
hgu133bhsentrezgcdf_13.0.0.zip
hgu133bhsentrezgprobe_13.0.0.zip
Homo sapiens hthgu133b (GeneTitan plates) hthgu133bhsentrezg.db_13.0.3.tar.gz
hthgu133bhsentrezgcdf_13.0.0.tar.gz
hthgu133bhsentrezgprobe_13.0.0.tar.gz
hthgu133bhsentrezg.db_13.0.3.zip
hthgu133bhsentrezgcdf_13.0.0.zip
hthgu133bhsentrezgprobe_13.0.0.zip
Homo Sapiens hgu133plus2
hgu133plus2hsentrezg.db_13.0.3.tar.gz
hgu133plus2hsentrezgcdf_13.0.0.tar.gz
hgu133plus2hsentrezgprobe_13.0.0.tar.gz
hgu133plus2hsentrezg.db_13.0.3.zip
hgu133plus2hsentrezgcdf_13.0.0.zip
hgu133plus2hsentrezgprobe_13.0.0.zip
Homo sapiens hthgu133pluspm (GeneTitan plates) hthgu133pluspmhsentrezg.db_13.0.3.tar.gz
hthgu133pluspmhsentrezgcdf_13.0.0.tar.gz
hthgu133pluspmhsentrezgprobe_13.0.0.tar.gz
hthgu133pluspmhsentrezg.db_13.0.3.zip
hthgu133pluspmhsentrezgcdf_13.0.0.zip
hthgu133pluspmhsentrezgprobe_13.0.0.zip
Homo Sapiens hgu95av2
hgu95av2hsentrezg.db_13.0.3.tar.gz
hgu95av2hsentrezgcdf_13.0.0.tar.gz
hgu95av2hsentrezgprobe_13.0.0.tar.gz
hgu95av2hsentrezg.db_13.0.3.zip
hgu95av2hsentrezgcdf_13.0.0.zip
hgu95av2hsentrezgprobe_13.0.0.zip
Homo Sapiens hgu95b
hgu95bhsentrezg.db_13.0.3.tar.gz
hgu95bhsentrezgcdf_13.0.0.tar.gz
hgu95bhsentrezgprobe_13.0.0.tar.gz
hgu95bhsentrezg.db_13.0.3.zip
hgu95bhsentrezgcdf_13.0.0.zip
hgu95bhsentrezgprobe_13.0.0.zip
Homo Sapiens hgu95c
hgu95chsentrezg.db_13.0.3.tar.gz
hgu95chsentrezgcdf_13.0.0.tar.gz
hgu95chsentrezgprobe_13.0.0.tar.gz
hgu95chsentrezg.db_13.0.3.zip
hgu95chsentrezgcdf_13.0.0.zip
hgu95chsentrezgprobe_13.0.0.zip
Homo Sapiens hgu95d
hgu95dhsentrezg.db_13.0.3.tar.gz
hgu95dhsentrezgcdf_13.0.0.tar.gz
hgu95dhsentrezgprobe_13.0.0.tar.gz
hgu95dhsentrezg.db_13.0.3.zip
hgu95dhsentrezgcdf_13.0.0.zip
hgu95dhsentrezgprobe_13.0.0.zip
Homo Sapiens hgu95e
hgu95ehsentrezg.db_13.0.3.tar.gz
hgu95ehsentrezgcdf_13.0.0.tar.gz
hgu95ehsentrezgprobe_13.0.0.tar.gz
hgu95ehsentrezg.db_13.0.3.zip
hgu95ehsentrezgcdf_13.0.0.zip
hgu95ehsentrezgprobe_13.0.0.zip
Homo sapiens 133x3p
u133x3phsentrezg.db_13.0.3.tar.gz
u133x3phsentrezgcdf_13.0.0.tar.gz
u133x3phsentrezgprobe_13.0.0.tar.gz
u133x3phsentrezg.db_13.0.3.zip
u133x3phsentrezgcdf_13.0.0.zip
u133x3phsentrezgprobe_13.0.0.zip
Homo sapiens hugene10stv1
hugene10stv1hsentrezg.db_13.0.3.tar.gz
hugene10stv1hsentrezgcdf_13.0.0.tar.gz
hugene10stv1hsentrezgprobe_13.0.0.tar.gz
hugene10stv1hsentrezg.db_13.0.3.zip
hugene10stv1hsentrezgcdf_13.0.0.zip
hugene10stv1hsentrezgprobe_13.0.0.zip
Mus musculus mgu74av2
mgu74av2mmentrezg.db_13.0.3.tar.gz
mgu74av2mmentrezgcdf_13.0.0.tar.gz
mgu74av2mmentrezgprobe_13.0.0.tar.gz
mgu74av2mmentrezg.db_13.0.3.zip
mgu74av2mmentrezgcdf_13.0.0.zip
mgu74av2mmentrezgprobe_13.0.0.zip
Mus musculus mgu74bv2
mgu74bv2mmentrezg.db_13.0.3.tar.gz
mgu74bv2mmentrezgcdf_13.0.0.tar.gz
mgu74bv2mmentrezgprobe_13.0.0.tar.gz
mgu74bv2mmentrezg.db_13.0.3.zip
mgu74bv2mmentrezgcdf_13.0.0.zip
mgu74bv2mmentrezgprobe_13.0.0.zip
Mus musculus mgu74cv2
mgu74cv2mmentrezg.db_13.0.3.tar.gz
mgu74cv2mmentrezgcdf_13.0.0.tar.gz
mgu74cv2mmentrezgprobe_13.0.0.tar.gz
mgu74cv2mmentrezg.db_13.0.3.zip
mgu74cv2mmentrezgcdf_13.0.0.zip
mgu74cv2mmentrezgprobe_13.0.0.zip
Mus musculus moe430a
moe430ammentrezg.db_13.0.3.tar.gz
moe430ammentrezgcdf_13.0.0.tar.gz
moe430ammentrezgprobe_13.0.0.tar.gz
moe430ammentrezg.db_13.0.3.zip
moe430ammentrezgcdf_13.0.0.zip
moe430ammentrezgprobe_13.0.0.zip
Mus musculus htmg430a (GeneTitan plates)
htmg430ammentrezg.db_13.0.3.tar.gz
htmg430ammentrezgcdf_13.0.0.tar.gz
htmg430ammentrezgprobe_13.0.0.tar.gz
htmg430ammentrezg.db_13.0.3.zip
htmg430ammentrezgcdf_13.0.0.zip
htmg430ammentrezgprobe_13.0.0.zip
Mus musculus moe430b
moe430bmmentrezg.db_13.0.3.tar.gz
moe430bmmentrezgcdf_13.0.0.tar.gz
moe430bmmentrezgprobe_13.0.0.tar.gz
moe430bmmentrezg.db_13.0.3.zip
moe430bmmentrezgcdf_13.0.0.zip
moe430bmmentrezgprobe_13.0.0.zip
Mus musculus htmg430b (GeneTitan plates) htmg430bmmentrezg.db_13.0.3.tar.gz
htmg430bmmentrezgcdf_13.0.0.tar.gz
htmg430bmmentrezgprobe_13.0.0.tar.gz
htmg430bmmentrezg.db_13.0.3.zip
htmg430bmmentrezgcdf_13.0.0.zip
htmg430bmmentrezgprobe_13.0.0.zip
Mus musculus moe430a2
mouse430a2mmentrezg.db_13.0.3.tar.gz
mouse430a2mmentrezgcdf_13.0.0.tar.gz
mouse430a2mmentrezgprobe_13.0.0.tar.gz
mouse430a2mmentrezg.db_13.0.3.zip
mouse430a2mmentrezgcdf_13.0.0.zip
mouse430a2mmentrezgprobe_13.0.0.zip
Mus musculus mouse4302
mouse4302mmentrezg.db_13.0.3.tar.gz
mouse4302mmentrezgcdf_13.0.0.tar.gz
mouse4302mmentrezgprobe_13.0.0.tar.gz
mouse4302mmentrezg.db_13.0.3.zip
mouse4302mmentrezgcdf_13.0.0.zip
mouse4302mmentrezgprobe_13.0.0.zip
Mus musculus htmg430pm (GeneTitan plates)
htmg430pmmmentrezg.db_13.0.3.tar.gz
htmg430pmmmentrezgcdf_13.0.0.tar.gz
htmg430pmmmentrezgprobe_13.0.0.tar.gz
htmg430pmmmentrezg.db_13.0.3.zip
htmg430pmmmentrezgcdf_13.0.0.zip
htmg430pmmmentrezgprobe_13.0.0.zip
Mus musculus mogene10stv1
mogene10stv1mmentrezg.db_13.0.3.tar.gz
mogene10stv1mmentrezgcdf_13.0.0.tar.gz
mogene10stv1mmentrezgprobe_13.0.0.tar.gz
mogene10stv1mmentrezg.db_13.0.3.zip
mogene10stv1mmentrezgcdf_13.0.0.zip
mogene10stv1mmentrezgprobe_13.0.0.zip
Rattus norvegicus rae230a
rae230arnentrezg.db_13.0.3.tar.gz
rae230arnentrezgcdf_13.0.0.tar.gz
rae230arnentrezgprobe_13.0.0.tar.gz
rae230arnentrezg.db_13.0.3.zip
rae230arnentrezgcdf_13.0.0.zip
rae230arnentrezgprobe_13.0.0.zip
Rattus norvegicus rae230b
rae230brnentrezg.db_13.0.3.tar.gz
rae230brnentrezgcdf_13.0.0.tar.gz
rae230brnentrezgprobe_13.0.0.tar.gz
rae230brnentrezg.db_13.0.3.zip
rae230brnentrezgcdf_13.0.0.zip
rae230brnentrezgprobe_13.0.0.zip
Rattus norvegicus rat2302
rat2302rnentrezg.db_13.0.3.tar.gz
rat2302rnentrezgcdf_13.0.0.tar.gz
rat2302rnentrezgprobe_13.0.0.tar.gz
rat2302rnentrezg.db_13.0.3.zip
rat2302rnentrezgcdf_13.0.0.zip
rat2302rnentrezgprobe_13.0.0.zip
Rattus norvegicus htrat230pm (GeneTitan plates)
htrat230pmrnentrezg.db_13.0.3.tar.gz
htrat230pmrnentrezgcdf_13.0.0.tar.gz
htrat230pmrnentrezgprobe_13.0.0.tar.gz
htrat230pmrnentrezg.db_13.0.3.zip
htrat230pmrnentrezgcdf_13.0.0.zip
htrat230pmrnentrezgprobe_13.0.0.zip
Rattus norvegicus rgu34a
rgu34arnentrezg.db_13.0.3.tar.gz
rgu34arnentrezgcdf_13.0.0.tar.gz
rgu34arnentrezgprobe_13.0.0.tar.gz
rgu34arnentrezg.db_13.0.3.zip
rgu34arnentrezgcdf_13.0.0.zip
rgu34arnentrezgprobe_13.0.0.zip
Rattus norvegicus rgu34b
rgu34brnentrezg.db_13.0.3.tar.gz
rgu34brnentrezgcdf_13.0.0.tar.gz
rgu34brnentrezgprobe_13.0.0.tar.gz
rgu34brnentrezg.db_13.0.3.zip
rgu34brnentrezgcdf_13.0.0.zip
rgu34brnentrezgprobe_13.0.0.zip
Rattus norvegicus rgu34c
rgu34crnentrezg.db_13.0.3.tar.gz
rgu34crnentrezgcdf_13.0.0.tar.gz
rgu34crnentrezgprobe_13.0.0.tar.gz
rgu34crnentrezg.db_13.0.3.zip
rgu34crnentrezgcdf_13.0.0.zip
rgu34crnentrezgprobe_13.0.0.zip
Rattus norvegicus ragene10stv1
ragene10stv1rnentrezg.db_13.0.3.tar.gz
ragene10stv1rnentrezgcdf_13.0.0.tar.gz
ragene10stv1rnentrezgprobe_13.0.0.tar.gz
ragene10stv1rnentrezg.db_13.0.3.zip
ragene10stv1rnentrezgcdf_13.0.0.zip
ragene10stv1rnentrezgprobe_13.0.0.zip
Rattus norvegicus htratfocus (GeneTitan plates)
htratfocusrnentrezg.db_13.0.3.tar.gz
htratfocusrnentrezgcdf_13.0.0.tar.gz
htratfocusrnentrezgprobe_13.0.0.tar.gz
htratfocusrnentrezg.db_13.0.3.zip
htratfocusrnentrezgcdf_13.0.0.zip
htratfocusrnentrezgprobe_13.0.0.zip


Contact:

Dr. Philip de Groot PhD
Nutrition, Metabolism and Genomics group
Division of Human Nutrition
Wageningen University
PO Box 8129
6700 EV Wageningen
The Netherlands
Phone: +31-317-485786
Fax:     +31-317-483342
Philip.deGroot@wur.nl

Additional information:
Nutrigenomics Consortium
TI Food & Nutrition
Wageningen University
FibeBiotics Consortium



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(This page is last modified on 7 November 2011).