Welcome to the NMG R-server!

Message 11 May 2011:

  • The packages are also available via: http://nmg-r.bioinformatics.nl/NuGO_R.html (instead of http://nugo-r.bioinformatics.nl/NuGO_R.html).
    The NuGO server is reaching the end of its life-time and will be disabled when hardware problems occur. Please use "nmg-r" instead of "nugo-r" for downloading from the repository!
  • Added (Affymetrix based) CDF-files for hugene10, mogene10, ragene10, hugene11, mogene11, and ragene11 arrays.

  • Messages 6 May 2011:

  • A table listing the Bioconductor 2.8 packages is created (see below).
  • The repository is set on the 2.8 release. To install older releases, please try:
  • Older libraries are available here (<= R-2.9.x), here (R-2.10.x), here (R-2.11.x), and here (R-2.12.x).

    Page contents:

    On this page, you can find R/Bioconductor libraries for Unix/Linux and Windows:
    1. Bioconductor support libraries for the human and mouse NuGO arrays.
    2. Bioconductor annotation libraries for the Affymetrix Gene Titan system that are not provided by the Bioconductor project.
    3. Bioconductor CDF libraries for the Affymetrix gene ST arrays and Gene Titan System that are not (or not proper) provided by the Bioconductor project.
    4. Bioconductor libraries for the MBNI Custom Chip Definition Files (CDFs) for the human and mouse NuGO arrays (cdf, probe, and Entrez gene annotation).
    5. For the current MBNI Custom Chip Definition Files (CDFs) release: Bioconductor libraries for human, mouse, and rat species that we support (Entrez gene; also probe and cdf)*.
    6. For the previous MBNI Custom Chip Definition Files (CDFs) release: Bioconductor libraries for human, mouse, and rat species that we support (Entrez gene; also probe and cdf)*.

    *: For convenience, we mirror the probe and CDF files as provided by MBNI. The version 14.1.0. annotation libraries, as hosted by MBNI, are complient with Bioconductor. These packages are mirrorred here (and not created by ourselves). In case MBNI provides no annotation libraries, these are created by ourselves. We provide only the Entrezg libraries, and tairg for Arabidopsis.


    REMARK: we decided to use the ENTREZ Custom CDF-files for the following reasons:
    Off course, you are free to use one of the other formats, e.g. ENSEMBL, but we do not provide Bioconductor annotation libraries for those custom CDFs.

    Fast installation

    NuGO arrays (Affymetrix):
        source("http://www.bioconductor.org/biocLite.R")
        biocLite(c("nugohs1a520180.db", "nugohs1a520180cdf", "nugohs1a520180probe"))
        biocLite(c("nugomm1a520177.db", "nugomm1a520177cdf", "nugomm1a520177probe"))

    hs: human microarrays; mm: mouse microarrays, and YES: these libraries are officially supported via Bioconductor!

    Custom CDFs:
    Please do this if you receive an error message on missing libraries (only the lacking libraries need to be installed):
        source("http://www.bioconductor.org/biocLite.R")
        biocLite(c("org.At.tair.db", "org.Hs.eg.db", "org.Mm.eg.db", "org.Rn.eg.db"))

    NuGO arrays (Custom CDF - current):
        install.packages(pkgs = c("nugohs1a520180hsentrezg.db", "nugohs1a520180hsentrezgcdf", "nugohs1a520180hsentrezgprobe"), repos = "http://nmg-r.bioinformatics.nl/bioc")
        install.packages(pkgs = c("nugomm1a520177mmentrezg.db", "nugomm1a520177mmentrezgcdf", "nugomm1a520177mmentrezgprobe"), repos = "http://nmg-r.bioinformatics.nl/bioc")

    NuGO arrays (Custom CDF - previous):
        install.packages(pkgs = c("nugohs1a520180hsentrezg.db", "nugohs1a520180hsentrezgcdf", "nugohs1a520180hsentrezgprobe"), repos = "http://nmg-r.bioinformatics.nl/bioc-previous")
        install.packages(pkgs = c("nugomm1a520177mmentrezg.db", "nugomm1a520177mmentrezgcdf", "nugomm1a520177mmentrezgprobe"), repos ="http://nmg-r.bioinformatics.nl/bioc-previous")

    Current Custom CDf is version 14.1.0 (March 11 2011). Previous Custom CDF is version 13.0.0 (July 6 2010).
    If new Custom CDF libraries are released, the versions will shift up (and the current "previous" repository will be dropped).
    Please check the tables below to see whether your chip is supported! Simply use the proper library names in the commands as shown in the examples above.

    Manual Installation

    Installation instructions

    For Windows: download the appropriate .zip-files from the tables below. In RGui, go to Packages => Install package(s) from local zip-files... Browse to the location where you downloaded your .zip-files and select the files you want to install. Done!

    For Unix/Linux: download the appropriate .tar.gz files from the tables below. cd to the directory where you downloaded your .tar.gz files and execute the following command (multiple times for multiple .tar.gz files): R CMD INSTALL <your downloaded .tar.gz file>.

    Download tables

    1. Human and mouse NuGO array support files as provided on the Bioconductor web site (6 May 2011).
        Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each chip!
    Affymetrix array type Linux/Unix
    Windows
    Human NuGO Array (nugohs1a520180) nugohs1a520180.db_2.3.0.tar.gz
    nugohs1a520180cdf_2.3.0.tar.gz
    nugohs1a520180probe_2.3.0.tar.gz
    nugohs1a520180.db_2.3.0.zip
    nugohs1a520180cdf_2.3.0.zip
    nugohs1a520180probe_2.3.0.zip
    Mouse NuGO Array (nugomm1a520177) nugomm1a520177.db_2.3.0.tar.gz
    nugomm1a520177cdf_2.3.0.tar.gz
    nugomm1a520177probe_2.3.0.tar.gz
    nugomm1a520177.db_2.3.0.zip
    nugomm1a520177cdf_2.3.0.zip
    nugomm1a520177probe_2.3.0.zip

    2. Human and mouse NuGO array support files (VERSION 14.1.0; MBNI Custom CDF; updated 6 May 2011).
    To obtain full microarray support, you need to download and install all three libraries for each chip!
    Affymetrix array type Linux/Unix Windows
    Human NuGO array (nugohs1a520180) nugohs1a520180hsentrezg.db_14.1.0.tar.gz
    nugohs1a520180hsentrezgcdf_14.1.0.tar.gz
    nugohs1a520180hsentrezgprobe_14.1.0.tar.gz
    nugohs1a520180hsentrezg.db_14.1.0.zip
    nugohs1a520180hsentrezgcdf_14.1.0.zip
    nugohs1a520180hsentrezgprobe_14.1.0.zip
    Mouse NuGO array (nugomm1a520177) nugomm1a520177mmentrezg.db_14.1.0.tar.gz
    nugomm1a520177mmentrezgcdf_14.1.0.tar.gz
    nugomm1a520177mmentrezgprobe_14.1.0.tar.gz
    nugomm1a520177mmentrezg.db_14.1.0.zip
    nugomm1a520177mmentrezgcdf_14.1.0.zip
    nugomm1a520177mmentrezgprobe_14.1.0.zip

    3. Annotation libraries for the Affymetrix GeneTitan plates (based on the AFFYMATRIX probe annotations). Updated 6 May 2011).
        The CDF and PROBE libraries are available on http://www.bioconductor.org or via the biocLite() command.
        To obtain full microarray support, you need to download and install all three libraries for each chip!
    Affymetrix array type Linux/Unix Windows
    Affymetrix GeneTitan plate hthgu133pluspm hthgu133pluspm.db_14.1.0.tar.gz hthgu133pluspm.db_14.1.0.zip
    Affymetrix GeneTitan plate htmg430a
    htmg430a.db_14.1.0.tar.gz htmg430a.db_14.1.0.zip
    Affymetrix GeneTitan plate htmg430b htmg430b.db_14.1.0.tar.gz htmg430b.db_14.1.0.zip
    Affymetrix GeneTitan plate htmg430pm
    htmg430pm.db_14.1.0.tar.gz htmg430pm.db_14.1.0.zip
    Affymetrix GeneTitan plate htrat230pm
    htrat230pm.db_14.1.0.tar.gz htrat230pm.db_14.1.0.zip
    Affymetrix GeneTitan plate htratfocus
    htratfocus.db_14.1.0.tar.gz htratfocus.db_14.1.0.zip

    4. Affymetrix derived CDF libraries for the gene ST arrays and the GeneTitan plates (Added 11 May 2011).
        These CDF-files are created utilizing oligo and the PdInfo2Cdf.R script.
        More information on the procedure is available here and here.
        Please use these files with the PROPER affyio library (as provided in Bioconductor 2.8 / R-2.13.x)!.

    Affymetrix array type Linux/Unix Windows
    hugene10stv1cdf hugene10stv1cdf_2.3.0.tar.gz hugene10stv1cdf_2.3.0.zip
    hugene11stv1cdf hugene11stv1cdf_2.3.0.tar.gz hugene11stv1cdf_2.3.0.zip
    mogene10stv1cdf mogene10stv1cdf_2.3.0.tar.gz mogene10stv1cdf_2.3.0.zip
    mogene11stv1cdf mogene11stv1cdf_2.3.0.tar.gz mogene11stv1cdf_2.3.0.zip
    ragene10stv1cdf
    ragene10stv1cdf_2.3.0.tar.gz ragene10stv1cdf_2.3.0.zip
    ragene11stv1cdf
    ragene11stv1cdf_2.3.0.tar.gz ragene11stv1cdf_2.3.0.zip

    5. Annotation libraries for the MBNI Custom CDF annotation files (mirrored from MBNI; VERSION 14.1.0; updated 6 May 2011).
        Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each chip!
    Affymetrix array type
    Linux/Unix
    Windows
    Arabidopsis thaliana (ath1121501attairg)
    ath1121501attairg.db_14.1.0.tar.gz
    ath1121501attairgcdf_14.1.0.tar.gz
    ath1121501attairgprobe_14.1.0.tar.gz
    ath1121501attairg.db_14.1.0.zip
    ath1121501attairgcdf_14.1.0.zip
    ath1121501attairgprobe_14.1.0.zip
    Arabidopsis thaliana (tilingatsnptilx520433attairg)
    NOTE: version 14 is not available, using version 13 instead!
    tilingatsnptilx520433attairg.db_13.0.2.tar.gz
    tilingatsnptilx520433attairgcdf_13.0.0.tar.gz
    tilingatsnptilx520433attairgprobe_13.0.0.tar.gz
    tilingatsnptilx520433attairg.db_13.0.2.zip
    tilingatsnptilx520433attairgcdf_13.0.0.zip
    tilingatsnptilx520433attairgprobe_13.0.0.zip

    Bos taurus (bovinebtentrezg)

    bovinebtentrezg.db_14.1.0.tar.gz
    bovinebtentrezgcdf_14.1.0.tar.gz
    bovinebtentrezgprobe_14.1.0.tar.gz
    bovinebtentrezg.db_14.1.0.zip
    bovinebtentrezgcdf_14.1.0.zip
    bovinebtentrezgprobe_14.1.0.zip
    Homo sapiens hgfocus
    hgfocushsentrezg.db_14.1.0.tar.gz
    hgfocushsentrezgcdf_14.1.0.tar.gz
    hgfocushsentrezgprobe_14.1.0.tar.gz
    hgfocushsentrezg.db_14.1.0.zip
    hgfocushsentrezgcdf_14.1.0.zip
    hgfocushsentrezgprobe_14.1.0.zip
    Homo sapiens hgu133a2
    hgu133a2hsentrezg.db_14.1.0.tar.gz
    hgu133a2hsentrezgcdf_14.1.0.tar.gz
    hgu133a2hsentrezgprobe_14.1.0.tar.gz
    hgu133a2hsentrezg.db_14.1.0.zip
    hgu133a2hsentrezgcdf_14.1.0.zip
    hgu133a2hsentrezgprobe_14.1.0.zip
    Homo sapiens hgu133a
    hgu133ahsentrezg.db_14.1.0.tar.gz
    hgu133ahsentrezgcdf_14.1.0.tar.gz
    hgu133ahsentrezgprobe_14.1.0.tar.gz
    hgu133ahsentrezg.db_14.1.0.zip
    hgu133ahsentrezgcdf_14.1.0.zip
    hgu133ahsentrezgprobe_14.1.0.zip
    Homo sapiens hthgu133a (GeneTitan plates)
    hthgu133ahsentrezg.db_14.1.0.tar.gz
    hthgu133ahsentrezgcdf_14.1.0.tar.gz
    hthgu133ahsentrezgprobe_14.1.0.tar.gz
    hthgu133ahsentrezg.db_14.1.0.zip
    hthgu133ahsentrezgcdf_14.1.0.zip
    hthgu133ahsentrezgprobe_14.1.0.zip
    Homo Sapiens hgu133b
    hgu133bhsentrezg.db_14.1.0.tar.gz
    hgu133bhsentrezgcdf_14.1.0.tar.gz
    hgu133bhsentrezgprobe_14.1.0.tar.gz
    hgu133bhsentrezg.db_14.1.0.zip
    hgu133bhsentrezgcdf_14.1.0.zip
    hgu133bhsentrezgprobe_14.1.0.zip
    Homo sapiens hthgu133b (GeneTitan plates) hthgu133bhsentrezg.db_14.1.0.tar.gz
    hthgu133bhsentrezgcdf_14.1.0.tar.gz
    hthgu133bhsentrezgprobe_14.1.0.tar.gz
    hthgu133bhsentrezg.db_14.1.0.zip
    hthgu133bhsentrezgcdf_14.1.0.zip
    hthgu133bhsentrezgprobe_14.1.0.zip
    Homo Sapiens hgu133plus2
    hgu133plus2hsentrezg.db_14.1.0.tar.gz
    hgu133plus2hsentrezgcdf_14.1.0.tar.gz
    hgu133plus2hsentrezgprobe_14.1.0.tar.gz
    hgu133plus2hsentrezg.db_14.1.0.zip
    hgu133plus2hsentrezgcdf_14.1.0.zip
    hgu133plus2hsentrezgprobe_14.1.0.zip
    Homo sapiens hthgu133pluspm (GeneTitan plates) hthgu133pluspmhsentrezg.db_14.1.0.tar.gz
    hthgu133pluspmhsentrezgcdf_14.1.0.tar.gz
    hthgu133pluspmhsentrezgprobe_14.1.0.tar.gz
    hthgu133pluspmhsentrezg.db_14.1.0.zip
    hthgu133pluspmhsentrezgcdf_14.1.0.zip
    hthgu133pluspmhsentrezgprobe_14.1.0.zip
    Homo Sapiens hgu95av2
    hgu95av2hsentrezg.db_14.1.0.tar.gz
    hgu95av2hsentrezgcdf_14.1.0.tar.gz
    hgu95av2hsentrezgprobe_14.1.0.tar.gz
    hgu95av2hsentrezg.db_14.1.0.zip
    hgu95av2hsentrezgcdf_14.1.0.zip
    hgu95av2hsentrezgprobe_14.1.0.zip

    Homo Sapiens hgu95a

    hgu95ahsentrezg.db_14.1.0.tar.gz
    hgu95ahsentrezgcdf_14.1.0.tar.gz
    hgu95ahsentrezgprobe_14.1.0.tar.gz
    hgu95ahsentrezg.db_14.1.0.zip
    hgu95ahsentrezgcdf_14.1.0.zip
    hgu95ahsentrezgprobe_14.1.0.zip
    Homo Sapiens hgu95b
    hgu95bhsentrezg.db_14.1.0.tar.gz
    hgu95bhsentrezgcdf_14.1.0.tar.gz
    hgu95bhsentrezgprobe_14.1.0.tar.gz
    hgu95bhsentrezg.db_14.1.0.zip
    hgu95bhsentrezgcdf_14.1.0.zip
    hgu95bhsentrezgprobe_14.1.0.zip
    Homo Sapiens hgu95c
    hgu95chsentrezg.db_14.1.0.tar.gz
    hgu95chsentrezgcdf_14.1.0.tar.gz
    hgu95chsentrezgprobe_14.1.0.tar.gz
    hgu95chsentrezg.db_14.1.0.zip
    hgu95chsentrezgcdf_14.1.0.zip
    hgu95chsentrezgprobe_14.1.0.zip
    Homo Sapiens hgu95d
    hgu95dhsentrezg.db_14.1.0.tar.gz
    hgu95dhsentrezgcdf_14.1.0.tar.gz
    hgu95dhsentrezgprobe_14.1.0.tar.gz
    hgu95dhsentrezg.db_14.1.0.zip
    hgu95dhsentrezgcdf_14.1.0.zip
    hgu95dhsentrezgprobe_14.1.0.zip
    Homo Sapiens hgu95e
    hgu95ehsentrezg.db_14.1.0.tar.gz
    hgu95ehsentrezgcdf_14.1.0.tar.gz
    hgu95ehsentrezgprobe_14.1.0.tar.gz
    hgu95ehsentrezg.db_14.1.0.zip
    hgu95ehsentrezgcdf_14.1.0.zip
    hgu95ehsentrezgprobe_14.1.0.zip

    Homo sapiens hcg110

    hcg110hsentrezg.db_14.1.0.tar.gz
    hcg110hsentrezgcdf_14.1.0.tar.gz
    hcg110hsentrezgprobe_14.1.0.tar.gz
    hcg110hsentrezg.db_14.1.0.zip
    hcg110hsentrezgcdf_14.1.0.zip
    hcg110hsentrezgprobe_14.1.0.zip

    Homo sapiens hgu219

    hgu219hsentrezg.db_14.1.0.tar.gz
    hgu219hsentrezgcdf_14.1.0.tar.gz
    hgu219hsentrezgprobe_14.1.0.tar.gz
    hgu219hsentrezg.db_14.1.0.zip
    hgu219hsentrezgcdf_14.1.0.zip
    hgu219hsentrezgprobe_14.1.0.zip

    Homo sapiens hu6800

    hu6800hsentrezg.db_14.1.0.tar.gz
    hu6800hsentrezgcdf_14.1.0.tar.gz
    hu6800hsentrezgprobe_14.1.0.tar.gz
    hu6800hsentrezg.db_14.1.0.zip
    hu6800hsentrezgcdf_14.1.0.zip
    hu6800hsentrezgprobe_14.1.0.zip
    Homo sapiens 133x3p
    u133x3phsentrezg.db_14.1.0.tar.gz
    u133x3phsentrezgcdf_14.1.0.tar.gz
    u133x3phsentrezgprobe_14.1.0.tar.gz
    u133x3phsentrezg.db_14.1.0.zip
    u133x3phsentrezgcdf_14.1.0.zip
    u133x3phsentrezgprobe_14.1.0.zip
    Homo sapiens hugene10stv1
    hugene10stv1hsentrezg.db_14.1.0.tar.gz
    hugene10stv1hsentrezgcdf_14.1.0.tar.gz
    hugene10stv1hsentrezgprobe_14.1.0.tar.gz
    hugene10stv1hsentrezg.db_14.1.0.zip
    hugene10stv1hsentrezgcdf_14.1.0.zip
    hugene10stv1hsentrezgprobe_14.1.0.zip

    Homo sapiens hugene11stv1

    hugene11stv1hsentrezg.db_14.1.0.tar.gz
    hugene11stv1hsentrezgcdf_14.1.0.tar.gz
    hugene11stv1hsentrezgprobe_14.1.0.tar.gz
    hugene11stv1hsentrezg.db_14.1.0.zip
    hugene11stv1hsentrezgcdf_14.1.0.zip
    hugene11stv1hsentrezgprobe_14.1.0.zip
    Mus musculus mgu74av2
    mgu74av2mmentrezg.db_14.1.0.tar.gz
    mgu74av2mmentrezgcdf_14.1.0.tar.gz
    mgu74av2mmentrezgprobe_14.1.0.tar.gz
    mgu74av2mmentrezg.db_14.1.0.zip
    mgu74av2mmentrezgcdf_14.1.0.zip
    mgu74av2mmentrezgprobe_14.1.0.zip
    Mus musculus mgu74bv2
    mgu74bv2mmentrezg.db_14.1.0.tar.gz
    mgu74bv2mmentrezgcdf_14.1.0.tar.gz
    mgu74bv2mmentrezgprobe_14.1.0.tar.gz
    mgu74bv2mmentrezg.db_14.1.0.zip
    mgu74bv2mmentrezgcdf_14.1.0.zip
    mgu74bv2mmentrezgprobe_14.1.0.zip
    Mus musculus mgu74cv2
    mgu74cv2mmentrezg.db_14.1.0.tar.gz
    mgu74cv2mmentrezgcdf_14.1.0.tar.gz
    mgu74cv2mmentrezgprobe_14.1.0.tar.gz
    mgu74cv2mmentrezg.db_14.1.0.zip
    mgu74cv2mmentrezgcdf_14.1.0.zip
    mgu74cv2mmentrezgprobe_14.1.0.zip
    Mus musculus moe430a
    moe430ammentrezg.db_14.1.0.tar.gz
    moe430ammentrezgcdf_14.1.0.tar.gz
    moe430ammentrezgprobe_14.1.0.tar.gz
    moe430ammentrezg.db_14.1.0.zip
    moe430ammentrezgcdf_14.1.0.zip
    moe430ammentrezgprobe_14.1.0.zip
    Mus musculus htmg430a (GeneTitan plates)
    htmg430ammentrezg.db_14.1.0.tar.gz
    htmg430ammentrezgcdf_14.1.0.tar.gz
    htmg430ammentrezgprobe_14.1.0.tar.gz
    htmg430ammentrezg.db_14.1.0.zip
    htmg430ammentrezgcdf_14.1.0.zip
    htmg430ammentrezgprobe_14.1.0.zip
    Mus musculus moe430b
    moe430bmmentrezg.db_14.1.0.tar.gz
    moe430bmmentrezgcdf_14.1.0.tar.gz
    moe430bmmentrezgprobe_14.1.0.tar.gz
    moe430bmmentrezg.db_14.1.0.zip
    moe430bmmentrezgcdf_14.1.0.zip
    moe430bmmentrezgprobe_14.1.0.zip
    Mus musculus htmg430b (GeneTitan plates) htmg430bmmentrezg.db_14.1.0.tar.gz
    htmg430bmmentrezgcdf_14.1.0.tar.gz
    htmg430bmmentrezgprobe_14.1.0.tar.gz
    htmg430bmmentrezg.db_14.1.0.zip
    htmg430bmmentrezgcdf_14.1.0.zip
    htmg430bmmentrezgprobe_14.1.0.zip
    Mus musculus moe430a2
    mouse430a2mmentrezg.db_14.1.0.tar.gz
    mouse430a2mmentrezgcdf_14.1.0.tar.gz
    mouse430a2mmentrezgprobe_14.1.0.tar.gz
    mouse430a2mmentrezg.db_14.1.0.zip
    mouse430a2mmentrezgcdf_14.1.0.zip
    mouse430a2mmentrezgprobe_14.1.0.zip
    Mus musculus mouse4302
    mouse4302mmentrezg.db_14.1.0.tar.gz
    mouse4302mmentrezgcdf_14.1.0.tar.gz
    mouse4302mmentrezgprobe_14.1.0.tar.gz
    mouse4302mmentrezg.db_14.1.0.zip
    mouse4302mmentrezgcdf_14.1.0.zip
    mouse4302mmentrezgprobe_14.1.0.zip
    Mus musculus htmg430pm (GeneTitan plates)
    htmg430pmmmentrezg.db_14.1.0.tar.gz
    htmg430pmmmentrezgcdf_14.1.0.tar.gz
    htmg430pmmmentrezgprobe_14.1.0.tar.gz
    htmg430pmmmentrezg.db_14.1.0.zip
    htmg430pmmmentrezgcdf_14.1.0.zip
    htmg430pmmmentrezgprobe_14.1.0.zip
    Mus musculus mogene10stv1
    mogene10stv1mmentrezg.db_14.1.0.tar.gz
    mogene10stv1mmentrezgcdf_14.1.0.tar.gz
    mogene10stv1mmentrezgprobe_14.1.0.tar.gz
    mogene10stv1mmentrezg.db_14.1.0.zip
    mogene10stv1mmentrezgcdf_14.1.0.zip
    mogene10stv1mmentrezgprobe_14.1.0.zip

    Mus musculus mogene11stv1

    mogene11stv1mmentrezg.db_14.1.0.tar.gz
    mogene11stv1mmentrezgcdf_14.1.0.tar.gz
    mogene11stv1mmentrezgprobe_14.1.0.tar.gz
    mogene11stv1mmentrezg.db_14.1.0.zip
    mogene11stv1mmentrezgcdf_14.1.0.zip
    mogene11stv1mmentrezgprobe_14.1.0.zip

    Sus scrofa porcine

    porcinessentrezg.db_14.1.0.tar.gz
    porcinessentrezgcdf_14.1.0.tar.gz
    porcinessentrezgprobe_14.1.0.tar.gz
    porcinessentrezg.db_14.1.0.zip
    porcinessentrezgcdf_14.1.0.zip
    porcinessentrezgprobe_14.1.0.zip
    Rattus norvegicus rae230a
    rae230arnentrezg.db_14.1.0.tar.gz
    rae230arnentrezgcdf_14.1.0.tar.gz
    rae230arnentrezgprobe_14.1.0.tar.gz
    rae230arnentrezg.db_14.1.0.zip
    rae230arnentrezgcdf_14.1.0.zip
    rae230arnentrezgprobe_14.1.0.zip
    Rattus norvegicus rae230b
    rae230brnentrezg.db_14.1.0.tar.gz
    rae230brnentrezgcdf_14.1.0.tar.gz
    rae230brnentrezgprobe_14.1.0.tar.gz
    rae230brnentrezg.db_14.1.0.zip
    rae230brnentrezgcdf_14.1.0.zip
    rae230brnentrezgprobe_14.1.0.zip
    Rattus norvegicus rat2302
    rat2302rnentrezg.db_14.1.0.tar.gz
    rat2302rnentrezgcdf_14.1.0.tar.gz
    rat2302rnentrezgprobe_14.1.0.tar.gz
    rat2302rnentrezg.db_14.1.0.zip
    rat2302rnentrezgcdf_14.1.0.zip
    rat2302rnentrezgprobe_14.1.0.zip
    Rattus norvegicus htrat230pm (GeneTitan plates)
    htrat230pmrnentrezg.db_14.1.0.tar.gz
    htrat230pmrnentrezgcdf_14.1.0.tar.gz
    htrat230pmrnentrezgprobe_14.1.0.tar.gz
    htrat230pmrnentrezg.db_14.1.0.zip
    htrat230pmrnentrezgcdf_14.1.0.zip
    htrat230pmrnentrezgprobe_14.1.0.zip
    Rattus norvegicus rgu34a
    rgu34arnentrezg.db_14.1.0.tar.gz
    rgu34arnentrezgcdf_14.1.0.tar.gz
    rgu34arnentrezgprobe_14.1.0.tar.gz
    rgu34arnentrezg.db_14.1.0.zip
    rgu34arnentrezgcdf_14.1.0.zip
    rgu34arnentrezgprobe_14.1.0.zip
    Rattus norvegicus rgu34b
    rgu34brnentrezg.db_14.1.0.tar.gz
    rgu34brnentrezgcdf_14.1.0.tar.gz
    rgu34brnentrezgprobe_14.1.0.tar.gz
    rgu34brnentrezg.db_14.1.0.zip
    rgu34brnentrezgcdf_14.1.0.zip
    rgu34brnentrezgprobe_14.1.0.zip
    Rattus norvegicus rgu34c
    rgu34crnentrezg.db_14.1.0.tar.gz
    rgu34crnentrezgcdf_14.1.0.tar.gz
    rgu34crnentrezgprobe_14.1.0.tar.gz
    rgu34crnentrezg.db_14.1.0.zip
    rgu34crnentrezgcdf_14.1.0.zip
    rgu34crnentrezgprobe_14.1.0.zip
    Rattus norvegicus ragene10stv1
    ragene10stv1rnentrezg.db_14.1.0.tar.gz
    ragene10stv1rnentrezgcdf_14.1.0.tar.gz
    ragene10stv1rnentrezgprobe_14.1.0.tar.gz
    ragene10stv1rnentrezg.db_14.1.0.zip
    ragene10stv1rnentrezgcdf_14.1.0.zip
    ragene10stv1rnentrezgprobe_14.1.0.zip

    Rattus norvegicus ragene11stv1

    ragene11stv1rnentrezg.db_14.1.0.tar.gz
    ragene11stv1rnentrezgcdf_14.1.0.tar.gz
    ragene11stv1rnentrezgprobe_14.1.0.tar.gz
    ragene11stv1rnentrezg.db_14.1.0.zip
    ragene11stv1rnentrezgcdf_14.1.0.zip
    ragene11stv1rnentrezgprobe_14.1.0.zip
    Rattus norvegicus htratfocus (GeneTitan plates)
    htratfocusrnentrezg.db_14.1.0.tar.gz
    htratfocusrnentrezgcdf_14.1.0.tar.gz
    htratfocusrnentrezgprobe_14.1.0.tar.gz
    htratfocusrnentrezg.db_14.1.0.zip
    htratfocusrnentrezgcdf_14.1.0.zip
    htratfocusrnentrezgprobe_14.1.0.zip

    Rattus norvegicus rattoxfx

    rattoxfxrnentrezg.db_14.1.0.tar.gz
    rattoxfxrnentrezgcdf_14.1.0.tar.gz
    rattoxfxrnentrezgprobe_14.1.0.tar.gz
    rattoxfxrnentrezg.db_14.1.0.zip
    rattoxfxrnentrezgcdf_14.1.0.zip
    rattoxfxrnentrezgprobe_14.1.0.zip

    Rattus norvegicus rnu34

    rnu34rnentrezg.db_14.1.0.tar.gz
    rnu34rnentrezgcdf_14.1.0.tar.gz
    rnu34rnentrezgprobe_14.1.0.tar.gz
    rnu34rnentrezg.db_14.1.0.zip
    rnu34rnentrezgcdf_14.1.0.zip
    rnu34rnentrezgprobe_14.1.0.zip

    Rattus norvegicus rtu34

    rtu34rnentrezg.db_14.1.0.tar.gz
    rtu34rnentrezgcdf_14.1.0.tar.gz
    rtu34rnentrezgprobe_14.1.0.tar.gz
    rtu34rnentrezg.db_14.1.0.zip
    rtu34rnentrezgcdf_14.1.0.zip
    rtu34rnentrezgprobe_14.1.0.zip

    6. Human and mouse NuGO array support files (VERSION 13.0.0; MBNI Custom CDF; updated 11 May 2011).
        Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each chip!
    Affymetrix array type Linux/Unix Windows
    Human NuGO array (nugohs1a520180) nugohs1a520180hsentrezg.db_13.0.2.tar.gz
    nugohs1a520180hsentrezgcdf_13.0.0.tar.gz
    nugohs1a520180hsentrezgprobe_13.0.0.tar.gz
    nugohs1a520180hsentrezg.db_13.0.2.zip
    nugohs1a520180hsentrezgcdf_13.0.0.zip
    nugohs1a520180hsentrezgprobe_13.0.0.zip
    Mouse NuGO array (nugomm1a520177) nugomm1a520177mmentrezg.db_13.0.2.tar.gz
    nugomm1a520177mmentrezgcdf_13.0.0.tar.gz
    nugomm1a520177mmentrezgprobe_13.0.0.tar.gz
    nugomm1a520177mmentrezg.db_13.0.2.zip
    nugomm1a520177mmentrezgcdf_13.0.0.zip
    nugomm1a520177mmentrezgprobe_13.0.0.zip

    7. Annotation libraries for the MBNI Custom CDF annotation files (VERSION 13.0.0; updated 11 May 2011).
        Here, also the CDF and PROBE libraries are available for download. To obtain full microarray support, you need to download and install all three libraries for each chip!
    Affymetrix array type
    Linux/Unix
    Windows
    Arabidopsis thaliana (ath1121501attairg)
    ath1121501attairg.db_13.0.2.tar.gz
    ath1121501attairgcdf_13.0.0.tar.gz
    ath1121501attairgprobe_13.0.0.tar.gz
    ath1121501attairg.db_13.0.2.zip
    ath1121501attairgcdf_13.0.0.zip
    ath1121501attairgprobe_13.0.0.zip
    Arabidopsis thaliana (tilingatsnptilx520433attairg) tilingatsnptilx520433attairg.db_13.0.2.tar.gz
    tilingatsnptilx520433attairgcdf_13.0.0.tar.gz
    tilingatsnptilx520433attairgprobe_13.0.0.tar.gz
    tilingatsnptilx520433attairg.db_13.0.2.zip
    tilingatsnptilx520433attairgcdf_13.0.0.zip
    tilingatsnptilx520433attairgprobe_13.0.0.zip
    Homo sapiens hgfocus
    hgfocushsentrezg.db_13.0.2.tar.gz
    hgfocushsentrezgcdf_13.0.0.tar.gz
    hgfocushsentrezgprobe_13.0.0.tar.gz
    hgfocushsentrezg.db_13.0.2.zip
    hgfocushsentrezgcdf_13.0.0.zip
    hgfocushsentrezgprobe_13.0.0.zip
    Homo sapiens hgu133a2
    hgu133a2hsentrezg.db_13.0.2.tar.gz
    hgu133a2hsentrezgcdf_13.0.0.tar.gz
    hgu133a2hsentrezgprobe_13.0.0.tar.gz
    hgu133a2hsentrezg.db_13.0.2.zip
    hgu133a2hsentrezgcdf_13.0.0.zip
    hgu133a2hsentrezgprobe_13.0.0.zip
    Homo sapiens hgu133a
    hgu133ahsentrezg.db_13.0.2.tar.gz
    hgu133ahsentrezgcdf_13.0.0.tar.gz
    hgu133ahsentrezgprobe_13.0.0.tar.gz
    hgu133ahsentrezg.db_13.0.2.zip
    hgu133ahsentrezgcdf_13.0.0.zip
    hgu133ahsentrezgprobe_13.0.0.zip
    Homo sapiens hthgu133a (GeneTitan plates)
    hthgu133ahsentrezg.db_13.0.2.tar.gz
    hthgu133ahsentrezgcdf_13.0.0.tar.gz
    hthgu133ahsentrezgprobe_13.0.0.tar.gz
    hthgu133ahsentrezg.db_13.0.2.zip
    hthgu133ahsentrezgcdf_13.0.0.zip
    hthgu133ahsentrezgprobe_13.0.0.zip
    Homo Sapiens hgu133b
    hgu133bhsentrezg.db_13.0.2.tar.gz
    hgu133bhsentrezgcdf_13.0.0.tar.gz
    hgu133bhsentrezgprobe_13.0.0.tar.gz
    hgu133bhsentrezg.db_13.0.2.zip
    hgu133bhsentrezgcdf_13.0.0.zip
    hgu133bhsentrezgprobe_13.0.0.zip
    Homo sapiens hthgu133b (GeneTitan plates) hthgu133bhsentrezg.db_13.0.2.tar.gz
    hthgu133bhsentrezgcdf_13.0.0.tar.gz
    hthgu133bhsentrezgprobe_13.0.0.tar.gz
    hthgu133bhsentrezg.db_13.0.2.zip
    hthgu133bhsentrezgcdf_13.0.0.zip
    hthgu133bhsentrezgprobe_13.0.0.zip
    Homo Sapiens hgu133plus2
    hgu133plus2hsentrezg.db_13.0.2.tar.gz
    hgu133plus2hsentrezgcdf_13.0.0.tar.gz
    hgu133plus2hsentrezgprobe_13.0.0.tar.gz
    hgu133plus2hsentrezg.db_13.0.2.zip
    hgu133plus2hsentrezgcdf_13.0.0.zip
    hgu133plus2hsentrezgprobe_13.0.0.zip
    Homo sapiens hthgu133pluspm (GeneTitan plates) hthgu133pluspmhsentrezg.db_13.0.2.tar.gz
    hthgu133pluspmhsentrezgcdf_13.0.0.tar.gz
    hthgu133pluspmhsentrezgprobe_13.0.0.tar.gz
    hthgu133pluspmhsentrezg.db_13.0.2.zip
    hthgu133pluspmhsentrezgcdf_13.0.0.zip
    hthgu133pluspmhsentrezgprobe_13.0.0.zip
    Homo Sapiens hgu95av2
    hgu95av2hsentrezg.db_13.0.2.tar.gz
    hgu95av2hsentrezgcdf_13.0.0.tar.gz
    hgu95av2hsentrezgprobe_13.0.0.tar.gz
    hgu95av2hsentrezg.db_13.0.2.zip
    hgu95av2hsentrezgcdf_13.0.0.zip
    hgu95av2hsentrezgprobe_13.0.0.zip
    Homo Sapiens hgu95b
    hgu95bhsentrezg.db_13.0.2.tar.gz
    hgu95bhsentrezgcdf_13.0.0.tar.gz
    hgu95bhsentrezgprobe_13.0.0.tar.gz
    hgu95bhsentrezg.db_13.0.2.zip
    hgu95bhsentrezgcdf_13.0.0.zip
    hgu95bhsentrezgprobe_13.0.0.zip
    Homo Sapiens hgu95c
    hgu95chsentrezg.db_13.0.2.tar.gz
    hgu95chsentrezgcdf_13.0.0.tar.gz
    hgu95chsentrezgprobe_13.0.0.tar.gz
    hgu95chsentrezg.db_13.0.2.zip
    hgu95chsentrezgcdf_13.0.0.zip
    hgu95chsentrezgprobe_13.0.0.zip
    Homo Sapiens hgu95d
    hgu95dhsentrezg.db_13.0.2.tar.gz
    hgu95dhsentrezgcdf_13.0.0.tar.gz
    hgu95dhsentrezgprobe_13.0.0.tar.gz
    hgu95dhsentrezg.db_13.0.2.zip
    hgu95dhsentrezgcdf_13.0.0.zip
    hgu95dhsentrezgprobe_13.0.0.zip
    Homo Sapiens hgu95e
    hgu95ehsentrezg.db_13.0.2.tar.gz
    hgu95ehsentrezgcdf_13.0.0.tar.gz
    hgu95ehsentrezgprobe_13.0.0.tar.gz
    hgu95ehsentrezg.db_13.0.2.zip
    hgu95ehsentrezgcdf_13.0.0.zip
    hgu95ehsentrezgprobe_13.0.0.zip
    Homo sapiens 133x3p
    u133x3phsentrezg.db_13.0.2.tar.gz
    u133x3phsentrezgcdf_13.0.0.tar.gz
    u133x3phsentrezgprobe_13.0.0.tar.gz
    u133x3phsentrezg.db_13.0.2.zip
    u133x3phsentrezgcdf_13.0.0.zip
    u133x3phsentrezgprobe_13.0.0.zip
    Homo sapiens hugene10stv1
    hugene10stv1hsentrezg.db_13.0.2.tar.gz
    hugene10stv1hsentrezgcdf_13.0.0.tar.gz
    hugene10stv1hsentrezgprobe_13.0.0.tar.gz
    hugene10stv1hsentrezg.db_13.0.2.zip
    hugene10stv1hsentrezgcdf_13.0.0.zip
    hugene10stv1hsentrezgprobe_13.0.0.zip
    Mus musculus mgu74av2
    mgu74av2mmentrezg.db_13.0.2.tar.gz
    mgu74av2mmentrezgcdf_13.0.0.tar.gz
    mgu74av2mmentrezgprobe_13.0.0.tar.gz
    mgu74av2mmentrezg.db_13.0.2.zip
    mgu74av2mmentrezgcdf_13.0.0.zip
    mgu74av2mmentrezgprobe_13.0.0.zip
    Mus musculus mgu74bv2
    mgu74bv2mmentrezg.db_13.0.2.tar.gz
    mgu74bv2mmentrezgcdf_13.0.0.tar.gz
    mgu74bv2mmentrezgprobe_13.0.0.tar.gz
    mgu74bv2mmentrezg.db_13.0.2.zip
    mgu74bv2mmentrezgcdf_13.0.0.zip
    mgu74bv2mmentrezgprobe_13.0.0.zip
    Mus musculus mgu74cv2
    mgu74cv2mmentrezg.db_13.0.2.tar.gz
    mgu74cv2mmentrezgcdf_13.0.0.tar.gz
    mgu74cv2mmentrezgprobe_13.0.0.tar.gz
    mgu74cv2mmentrezg.db_13.0.2.zip
    mgu74cv2mmentrezgcdf_13.0.0.zip
    mgu74cv2mmentrezgprobe_13.0.0.zip
    Mus musculus moe430a
    moe430ammentrezg.db_13.0.2.tar.gz
    moe430ammentrezgcdf_13.0.0.tar.gz
    moe430ammentrezgprobe_13.0.0.tar.gz
    moe430ammentrezg.db_13.0.2.zip
    moe430ammentrezgcdf_13.0.0.zip
    moe430ammentrezgprobe_13.0.0.zip
    Mus musculus htmg430a (GeneTitan plates)
    htmg430ammentrezg.db_13.0.2.tar.gz
    htmg430ammentrezgcdf_13.0.0.tar.gz
    htmg430ammentrezgprobe_13.0.0.tar.gz
    htmg430ammentrezg.db_13.0.2.zip
    htmg430ammentrezgcdf_13.0.0.zip
    htmg430ammentrezgprobe_13.0.0.zip
    Mus musculus moe430b
    moe430bmmentrezg.db_13.0.2.tar.gz
    moe430bmmentrezgcdf_13.0.0.tar.gz
    moe430bmmentrezgprobe_13.0.0.tar.gz
    moe430bmmentrezg.db_13.0.2.zip
    moe430bmmentrezgcdf_13.0.0.zip
    moe430bmmentrezgprobe_13.0.0.zip
    Mus musculus htmg430b (GeneTitan plates) htmg430bmmentrezg.db_13.0.2.tar.gz
    htmg430bmmentrezgcdf_13.0.0.tar.gz
    htmg430bmmentrezgprobe_13.0.0.tar.gz
    htmg430bmmentrezg.db_13.0.2.zip
    htmg430bmmentrezgcdf_13.0.0.zip
    htmg430bmmentrezgprobe_13.0.0.zip
    Mus musculus moe430a2
    mouse430a2mmentrezg.db_13.0.2.tar.gz
    mouse430a2mmentrezgcdf_13.0.0.tar.gz
    mouse430a2mmentrezgprobe_13.0.0.tar.gz
    mouse430a2mmentrezg.db_13.0.2.zip
    mouse430a2mmentrezgcdf_13.0.0.zip
    mouse430a2mmentrezgprobe_13.0.0.zip
    Mus musculus mouse4302
    mouse4302mmentrezg.db_13.0.2.tar.gz
    mouse4302mmentrezgcdf_13.0.0.tar.gz
    mouse4302mmentrezgprobe_13.0.0.tar.gz
    mouse4302mmentrezg.db_13.0.2.zip
    mouse4302mmentrezgcdf_13.0.0.zip
    mouse4302mmentrezgprobe_13.0.0.zip
    Mus musculus htmg430pm (GeneTitan plates)
    htmg430pmmmentrezg.db_13.0.2.tar.gz
    htmg430pmmmentrezgcdf_13.0.0.tar.gz
    htmg430pmmmentrezgprobe_13.0.0.tar.gz
    htmg430pmmmentrezg.db_13.0.2.zip
    htmg430pmmmentrezgcdf_13.0.0.zip
    htmg430pmmmentrezgprobe_13.0.0.zip
    Mus musculus mogene10stv1
    mogene10stv1mmentrezg.db_13.0.2.tar.gz
    mogene10stv1mmentrezgcdf_13.0.0.tar.gz
    mogene10stv1mmentrezgprobe_13.0.0.tar.gz
    mogene10stv1mmentrezg.db_13.0.2.zip
    mogene10stv1mmentrezgcdf_13.0.0.zip
    mogene10stv1mmentrezgprobe_13.0.0.zip
    Rattus norvegicus rae230a
    rae230arnentrezg.db_13.0.2.tar.gz
    rae230arnentrezgcdf_13.0.0.tar.gz
    rae230arnentrezgprobe_13.0.0.tar.gz
    rae230arnentrezg.db_13.0.2.zip
    rae230arnentrezgcdf_13.0.0.zip
    rae230arnentrezgprobe_13.0.0.zip
    Rattus norvegicus rae230b
    rae230brnentrezg.db_13.0.2.tar.gz
    rae230brnentrezgcdf_13.0.0.tar.gz
    rae230brnentrezgprobe_13.0.0.tar.gz
    rae230brnentrezg.db_13.0.2.zip
    rae230brnentrezgcdf_13.0.0.zip
    rae230brnentrezgprobe_13.0.0.zip
    Rattus norvegicus rat2302
    rat2302rnentrezg.db_13.0.2.tar.gz
    rat2302rnentrezgcdf_13.0.0.tar.gz
    rat2302rnentrezgprobe_13.0.0.tar.gz
    rat2302rnentrezg.db_13.0.2.zip
    rat2302rnentrezgcdf_13.0.0.zip
    rat2302rnentrezgprobe_13.0.0.zip
    Rattus norvegicus htrat230pm (GeneTitan plates)
    htrat230pmrnentrezg.db_13.0.2.tar.gz
    htrat230pmrnentrezgcdf_13.0.0.tar.gz
    htrat230pmrnentrezgprobe_13.0.0.tar.gz
    htrat230pmrnentrezg.db_13.0.2.zip
    htrat230pmrnentrezgcdf_13.0.0.zip
    htrat230pmrnentrezgprobe_13.0.0.zip
    Rattus norvegicus rgu34a
    rgu34arnentrezg.db_13.0.2.tar.gz
    rgu34arnentrezgcdf_13.0.0.tar.gz
    rgu34arnentrezgprobe_13.0.0.tar.gz
    rgu34arnentrezg.db_13.0.2.zip
    rgu34arnentrezgcdf_13.0.0.zip
    rgu34arnentrezgprobe_13.0.0.zip
    Rattus norvegicus rgu34b
    rgu34brnentrezg.db_13.0.2.tar.gz
    rgu34brnentrezgcdf_13.0.0.tar.gz
    rgu34brnentrezgprobe_13.0.0.tar.gz
    rgu34brnentrezg.db_13.0.2.zip
    rgu34brnentrezgcdf_13.0.0.zip
    rgu34brnentrezgprobe_13.0.0.zip
    Rattus norvegicus rgu34c
    rgu34crnentrezg.db_13.0.2.tar.gz
    rgu34crnentrezgcdf_13.0.0.tar.gz
    rgu34crnentrezgprobe_13.0.0.tar.gz
    rgu34crnentrezg.db_13.0.2.zip
    rgu34crnentrezgcdf_13.0.0.zip
    rgu34crnentrezgprobe_13.0.0.zip
    Rattus norvegicus ragene10stv1
    ragene10stv1rnentrezg.db_13.0.2.tar.gz
    ragene10stv1rnentrezgcdf_13.0.0.tar.gz
    ragene10stv1rnentrezgprobe_13.0.0.tar.gz
    ragene10stv1rnentrezg.db_13.0.2.zip
    ragene10stv1rnentrezgcdf_13.0.0.zip
    ragene10stv1rnentrezgprobe_13.0.0.zip
    Rattus norvegicus htratfocus (GeneTitan plates)
    htratfocusrnentrezg.db_13.0.2.tar.gz
    htratfocusrnentrezgcdf_13.0.0.tar.gz
    htratfocusrnentrezgprobe_13.0.0.tar.gz
    htratfocusrnentrezg.db_13.0.2.zip
    htratfocusrnentrezgcdf_13.0.0.zip
    htratfocusrnentrezgprobe_13.0.0.zip


    Contact:

    Dr. Philip de Groot PhD
    Nutrition, Metabolism and Genomics group
    Division of Human Nutrition
    Wageningen University
    PO Box 8129
    6700 EV Wageningen
    The Netherlands
    Phone: +31-317-485786
    Fax:     +31-317-483342
    Philip.deGroot@wur.nl

    Additional information:
    Nutrigenomics Consortium
    TI Food & Nutrition
    Wageningen University



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    (This page is last modified on 11 May 2011).